Variant report

Variant	rs288170
Chromosome Location	chr5:107356374-107356375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs149457	0.83[EUR][1000 genomes]
rs15158	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158172	0.85[ASN][1000 genomes]
rs158186	0.85[EUR][1000 genomes]
rs158285	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs188274	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286749	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286750	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286753	0.93[ASN][1000 genomes]
rs286781	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286818	0.84[EUR][1000 genomes]
rs288131	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288139	0.93[ASN][1000 genomes]
rs288143	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288144	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288145	0.96[ASN][1000 genomes]
rs288146	0.96[ASN][1000 genomes]
rs288147	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs288149	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs288151	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288152	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288154	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288157	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288161	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288164	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288168	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288169	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288171	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288172	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288173	0.89[EUR][1000 genomes]
rs288180	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs288228	0.89[ASN][1000 genomes]
rs288230	0.82[EUR][1000 genomes]
rs288232	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs288233	0.82[EUR][1000 genomes]
rs288237	0.91[ASN][1000 genomes]
rs288238	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs289227	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs289228	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs289230	0.91[ASN][1000 genomes]
rs34415	0.86[EUR][1000 genomes]
rs365981	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs370216	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs372894	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40067	0.85[EUR][1000 genomes]
rs406139	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41129	0.81[EUR][1000 genomes]
rs41131	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3378142	chr5:107354953-107358201	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
3	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
4	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
7	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:107352800-107358200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:107353200-107357200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:107353400-107357600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:107354200-107357200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:107355000-107360400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:107355000-107361000	Weak transcription	Primary B cells from cord blood	blood
15	chr5:107355400-107358200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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