Variant report

Variant	rs286750
Chromosome Location	chr5:107403292-107403293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10035292	0.89[CHB][hapmap]
rs11242662	0.89[CHB][hapmap]
rs149457	0.91[EUR][1000 genomes]
rs15158	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158172	0.93[ASN][1000 genomes]
rs158173	0.83[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs158175	0.89[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs158186	0.93[EUR][1000 genomes]
rs158283	0.91[CEU][hapmap];0.93[TSI][hapmap]
rs158285	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs158415	0.89[CHB][hapmap]
rs158609	0.83[TSI][hapmap]
rs188274	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286741	0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs286743	0.82[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs286744	0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs286749	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286753	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs286776	0.83[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs286777	0.80[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs286779	0.81[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs286781	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286794	0.89[CHB][hapmap]
rs286802	0.86[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs286809	0.91[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs286818	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs288131	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288139	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs288143	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288144	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288145	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs288146	1.00[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs288147	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs288149	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288151	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288152	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288154	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288157	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288161	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288164	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288168	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288169	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288170	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288171	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288172	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288173	0.91[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs288180	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs288183	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs288228	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs288230	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs288232	0.91[CEU][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288233	0.89[EUR][1000 genomes]
rs288237	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs288238	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs289227	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289228	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289230	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs34383	0.83[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs34415	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34423	0.83[CEU][hapmap]
rs34424	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs34427	0.83[CEU][hapmap];0.84[CHD][hapmap];0.80[TSI][hapmap]
rs34428	0.83[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap]
rs34432	0.82[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs365981	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs370216	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs372894	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs40067	0.93[EUR][1000 genomes]
rs40070	0.82[CEU][hapmap]
rs40071	0.83[CEU][hapmap]
rs406139	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41129	0.91[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs41131	0.83[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs457378	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs4957738	0.89[CHB][hapmap]
rs7728371	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107399200-107403400	Weak transcription	Fetal Lung	lung
4	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:107403200-107403600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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