Variant report

Variant	rs158415
Chromosome Location	chr5:107412941-107412942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10035292	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10058029	0.94[ASN][1000 genomes]
rs10060325	0.93[ASN][1000 genomes]
rs10070525	0.87[JPT][hapmap]
rs11242661	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11242662	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515105	0.81[CHB][hapmap]
rs12523367	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs15158	0.85[CHB][hapmap]
rs17161080	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2416522	0.87[JPT][hapmap]
rs286749	0.90[CHB][hapmap]
rs286750	0.89[CHB][hapmap]
rs286753	0.90[CHB][hapmap]
rs286777	0.81[JPT][hapmap]
rs286794	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288131	0.90[CHB][hapmap]
rs288139	0.90[CHB][hapmap]
rs288143	0.90[CHB][hapmap]
rs288144	0.90[CHB][hapmap]
rs288145	0.90[CHB][hapmap]
rs288146	0.90[CHB][hapmap]
rs288147	0.90[CHB][hapmap]
rs288154	0.85[CHB][hapmap]
rs288157	0.90[CHB][hapmap]
rs288161	0.90[CHB][hapmap]
rs288164	0.89[CHB][hapmap]
rs288169	0.89[CHB][hapmap]
rs288171	0.90[CHB][hapmap]
rs288172	0.84[CHB][hapmap]
rs288228	0.90[CHB][hapmap]
rs288237	0.90[CHB][hapmap]
rs289227	0.90[CHB][hapmap]
rs289228	0.90[CHB][hapmap]
rs289230	0.89[CHB][hapmap]
rs34383	0.82[JPT][hapmap]
rs4957738	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6865439	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6867631	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs723396	0.86[JPT][hapmap]
rs7728371	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:107406200-107413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:107410200-107413800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:107410200-107413800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:107410200-107415400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:107410400-107414600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:107410800-107414400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:107411000-107415600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:107411200-107413600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:107411600-107416000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:107412200-107418000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:107412200-107420600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:107412400-107414000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:107412600-107415000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:107412600-107416000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links