Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035292	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10054047	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11242662	0.81[CHB][hapmap]
rs12515105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12523367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13159387	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158173	0.86[CHB][hapmap]
rs158415	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs286741	0.86[CHB][hapmap]
rs286743	0.86[CHB][hapmap]
rs286744	0.86[CHB][hapmap]
rs286776	0.85[CHB][hapmap]
rs286777	0.85[CHB][hapmap]
rs286779	0.86[CHB][hapmap]
rs286794	0.81[CHB][hapmap]
rs286809	0.85[CHB][hapmap]
rs286818	0.86[CHB][hapmap]
rs34383	0.86[CHB][hapmap]
rs34415	0.82[CHB][hapmap]
rs34428	0.85[CHB][hapmap]
rs34432	0.85[CHB][hapmap]
rs41129	0.81[CHB][hapmap]
rs41131	0.82[CHB][hapmap]
rs457378	0.85[CHB][hapmap]
rs4957550	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes]
rs4957738	0.81[CHB][hapmap]
rs6870573	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7728371	0.81[CHB][hapmap]
rs7732946	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107471000-107477400	Weak transcription	Psoas Muscle	Psoas
3	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107475000-107482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:107475200-107527400	Weak transcription	Liver	Liver
6	chr5:107475600-107479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:107475600-107479000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
9	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
10	chr5:107476400-107479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:107477000-107477600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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