Variant report

Variant	rs34383
Chromosome Location	chr5:107452606-107452607
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12515105	0.86[CHB][hapmap]
rs12523367	0.86[CHB][hapmap]
rs149457	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs15158	0.92[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs158173	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158175	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158186	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158283	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs158285	0.87[EUR][1000 genomes]
rs158415	0.82[JPT][hapmap]
rs17161080	0.86[CHB][hapmap]
rs188274	0.83[EUR][1000 genomes]
rs286741	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286743	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286744	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286749	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs286750	0.83[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs286753	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs286776	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs286777	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs286779	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286781	0.88[EUR][1000 genomes]
rs286802	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286809	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286818	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288131	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs288139	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs288143	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs288144	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs288145	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs288146	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs288147	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs288149	0.83[EUR][1000 genomes]
rs288151	0.83[EUR][1000 genomes]
rs288152	0.83[EUR][1000 genomes]
rs288154	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs288157	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs288161	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs288164	0.91[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs288168	0.81[EUR][1000 genomes]
rs288169	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs288171	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs288172	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs288173	0.91[CEU][hapmap]
rs288180	0.91[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs288183	0.90[JPT][hapmap]
rs288228	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs288230	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs288232	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs288233	0.82[EUR][1000 genomes]
rs288237	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs288238	0.86[EUR][1000 genomes]
rs289227	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs289228	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs289230	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs34415	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34423	0.85[CEU][hapmap]
rs34424	0.82[CEU][hapmap]
rs34427	0.83[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs34428	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs34432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370216	0.83[EUR][1000 genomes]
rs372894	0.83[EUR][1000 genomes]
rs40067	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs40070	0.84[CEU][hapmap]
rs40071	0.85[CEU][hapmap]
rs41129	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41131	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs457378	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
3	chr5:107441200-107455000	Weak transcription	Psoas Muscle	Psoas
4	chr5:107441800-107457400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:107448200-107458200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:107449000-107455000	Weak transcription	Left Ventricle	heart
7	chr5:107449000-107467200	Weak transcription	Aorta	Aorta
8	chr5:107451800-107459200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:107452000-107455200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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