Variant report

Variant	rs10054927
Chromosome Location	chr5:79600508-79600509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr5:79600289-79600704	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr5:79600299-79600644	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000184188	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10052506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10054681	0.84[ASN][1000 genomes]
rs10055300	0.84[ASN][1000 genomes]
rs10056958	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10070311	0.83[ASN][1000 genomes]
rs10070958	0.88[ASN][1000 genomes]
rs10071189	0.84[ASN][1000 genomes]
rs10075519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10474013	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10474015	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10474614	0.84[ASN][1000 genomes]
rs12332228	0.82[ASN][1000 genomes]
rs12332699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13361029	0.84[ASN][1000 genomes]
rs28366631	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28401747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28424275	0.88[ASN][1000 genomes]
rs28520641	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28605690	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4998063	0.83[JPT][hapmap]
rs6453512	0.84[ASN][1000 genomes]
rs72778013	0.84[ASN][1000 genomes]
rs72778033	0.88[ASN][1000 genomes]
rs72778039	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293811	0.86[ASN][1000 genomes]
rs9293814	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950788	0.84[ASN][1000 genomes]
rs9654436	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79598800-79605400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79600400-79601000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:79600400-79601200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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