Variant report

Variant	rs9654436
Chromosome Location	chr5:79571202-79571203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79551179..79553580-chr5:79570756..79573445,3	MCF-7	breast:
2	chr5:79387296..79388184-chr5:79570910..79571894,4	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10037587	0.93[EUR][1000 genomes]
rs10052506	0.83[ASN][1000 genomes]
rs10054681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054927	0.84[ASN][1000 genomes]
rs10055300	1.00[ASN][1000 genomes]
rs10056958	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070311	0.99[ASN][1000 genomes]
rs10070958	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10071189	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075519	0.88[ASN][1000 genomes]
rs10474013	0.96[ASN][1000 genomes]
rs10474015	0.90[ASN][1000 genomes]
rs10474614	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332228	0.98[ASN][1000 genomes]
rs12332699	0.96[ASN][1000 genomes]
rs13353903	0.93[EUR][1000 genomes]
rs13360748	0.95[EUR][1000 genomes]
rs13361029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366631	0.96[ASN][1000 genomes]
rs28401747	0.96[ASN][1000 genomes]
rs28424275	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28520641	0.85[ASN][1000 genomes]
rs28605690	0.87[ASN][1000 genomes]
rs6453512	1.00[ASN][1000 genomes]
rs72778013	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778033	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72778039	0.84[ASN][1000 genomes]
rs9293808	0.80[EUR][1000 genomes]
rs9293811	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950788	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:79570800-79571400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:79571000-79571400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr5:79571000-79571400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:79571000-79571400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:79571200-79571400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:79571200-79571400	Enhancers	Fetal Thymus	thymus
9	chr5:79571200-79571600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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