Variant report

Variant	rs10056958
Chromosome Location	chr5:79583721-79583722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10037587	0.93[EUR][1000 genomes]
rs10041270	0.81[JPT][hapmap]
rs10050887	1.00[YRI][hapmap]
rs10052506	0.83[ASN][1000 genomes]
rs10054681	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054927	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10055300	1.00[ASN][1000 genomes]
rs10070311	0.99[ASN][1000 genomes]
rs10070958	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10071189	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075519	0.88[ASN][1000 genomes]
rs10155621	1.00[YRI][hapmap]
rs10474013	0.96[ASN][1000 genomes]
rs10474015	0.90[ASN][1000 genomes]
rs10474614	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1126176	0.82[JPT][hapmap]
rs12332228	0.98[ASN][1000 genomes]
rs12332699	0.96[ASN][1000 genomes]
rs13353903	0.93[EUR][1000 genomes]
rs13360748	0.95[EUR][1000 genomes]
rs13361029	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366631	0.96[ASN][1000 genomes]
rs28401747	0.96[ASN][1000 genomes]
rs28424275	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28520641	0.85[ASN][1000 genomes]
rs28605690	0.87[ASN][1000 genomes]
rs6453512	1.00[ASN][1000 genomes]
rs6872359	0.82[JPT][hapmap]
rs72778013	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72778039	0.84[ASN][1000 genomes]
rs9293807	0.82[JPT][hapmap]
rs9293808	1.00[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs9293811	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950788	1.00[ASN][1000 genomes]
rs9654436	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv964902	chr5:79578051-79585364	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79580600-79595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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