Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10041270	0.81[JPT][hapmap]
rs10052506	0.83[ASN][1000 genomes]
rs10054681	1.00[ASN][1000 genomes]
rs10054927	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10055300	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10056958	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10070311	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10070958	0.96[ASN][1000 genomes]
rs10071189	1.00[ASN][1000 genomes]
rs10075519	0.88[ASN][1000 genomes]
rs10474013	0.96[ASN][1000 genomes]
rs10474015	0.90[ASN][1000 genomes]
rs10474614	1.00[ASN][1000 genomes]
rs1126176	0.82[JPT][hapmap]
rs12332228	0.98[ASN][1000 genomes]
rs12332699	0.96[ASN][1000 genomes]
rs13361029	1.00[ASN][1000 genomes]
rs28366631	0.96[ASN][1000 genomes]
rs28401747	0.96[ASN][1000 genomes]
rs28424275	0.96[ASN][1000 genomes]
rs28520641	0.85[ASN][1000 genomes]
rs28605690	0.87[ASN][1000 genomes]
rs6872359	0.82[JPT][hapmap]
rs72778013	1.00[ASN][1000 genomes]
rs72778033	0.96[ASN][1000 genomes]
rs72778039	0.84[ASN][1000 genomes]
rs9293807	0.82[JPT][hapmap]
rs9293808	0.81[JPT][hapmap]
rs9293811	0.97[ASN][1000 genomes]
rs950788	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654436	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv522634	chr5:79577760-79580818	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv964902	chr5:79578051-79585364	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr5:79577800-79578800	Enhancers	Fetal Intestine Large	intestine
3	chr5:79578200-79580600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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