Variant report

Variant	rs10055012
Chromosome Location	chr5:115900663-115900664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115895001..115897524-chr5:115899186..115901085,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1027742	0.85[MEX][hapmap]
rs17140120	0.86[GIH][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs17140139	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1862372	0.82[GIH][hapmap]
rs2840113	0.89[ASW][hapmap];0.90[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5016403	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724329	0.88[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7730674	0.97[ASN][1000 genomes]
rs9327006	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327007	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327008	0.98[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115886600-115901000	Weak transcription	Placenta	Placenta
2	chr5:115890000-115900800	Enhancers	Brain Hippocampus Middle	brain
3	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
4	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
5	chr5:115891000-115907600	Weak transcription	Ovary	ovary
6	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
7	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:115893800-115902400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:115894400-115900800	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:115894400-115902600	Enhancers	Brain Substantia Nigra	brain
11	chr5:115895600-115901400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:115895800-115902400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
15	chr5:115896000-115905200	Weak transcription	Lung	lung
16	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:115896200-115901000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:115896400-115904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:115897200-115901000	Weak transcription	Fetal Intestine Large	intestine
21	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
22	chr5:115898000-115903600	Enhancers	Brain Angular Gyrus	brain
23	chr5:115898400-115902600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:115898800-115901000	Weak transcription	Pancreas	Pancrea
27	chr5:115898800-115902200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:115898800-115902200	Enhancers	Fetal Brain Female	brain
29	chr5:115898800-115902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:115898800-115902400	Weak transcription	Left Ventricle	heart
31	chr5:115898800-115904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:115898800-115904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:115899000-115901200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr5:115899000-115902600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr5:115899200-115901800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr5:115899400-115902000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:115899400-115903200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:115899600-115900800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr5:115899600-115902000	Enhancers	Fetal Muscle Leg	muscle
40	chr5:115899600-115902800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
41	chr5:115899800-115901400	Weak transcription	Brain Germinal Matrix	brain
42	chr5:115899800-115902600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:115899800-115903600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:115900000-115901400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:115900000-115904000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:115900200-115901400	Enhancers	Small Intestine	intestine
47	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:115900400-115900800	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr5:115900400-115900800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:115900400-115900800	Weak transcription	Fetal Brain Male	brain

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