Variant report

Variant	rs9327007
Chromosome Location	chr5:115899132-115899133
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10055012	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17140139	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2840113	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs5016403	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724329	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730674	1.00[ASN][1000 genomes]
rs9327006	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327008	0.96[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115880800-115900600	Weak transcription	Fetal Kidney	kidney
2	chr5:115886600-115901000	Weak transcription	Placenta	Placenta
3	chr5:115889400-115899400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:115890000-115900800	Enhancers	Brain Hippocampus Middle	brain
5	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
6	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
7	chr5:115891000-115900600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:115891000-115907600	Weak transcription	Ovary	ovary
9	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
10	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:115893800-115902400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr5:115894400-115900800	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:115894400-115902600	Enhancers	Brain Substantia Nigra	brain
14	chr5:115895600-115901400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:115895800-115902400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
18	chr5:115896000-115905200	Weak transcription	Lung	lung
19	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:115896200-115899400	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:115896200-115899600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:115896200-115899600	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:115896200-115899600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:115896200-115899800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:115896200-115901000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:115896400-115904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:115896600-115899400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:115896600-115899400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:115896600-115899800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr5:115897200-115900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:115897200-115901000	Weak transcription	Fetal Intestine Large	intestine
33	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
34	chr5:115897400-115900600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:115897600-115899800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:115898000-115903600	Enhancers	Brain Angular Gyrus	brain
37	chr5:115898200-115900000	Enhancers	Brain Anterior Caudate	brain
38	chr5:115898200-115900200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr5:115898400-115899200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr5:115898400-115902600	Enhancers	H1 Cell Line	embryonic stem cell
41	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr5:115898600-115899800	Enhancers	Brain Germinal Matrix	brain
43	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:115898800-115899200	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr5:115898800-115899600	Weak transcription	Fetal Intestine Small	intestine
46	chr5:115898800-115900000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:115898800-115900200	Weak transcription	Small Intestine	intestine
48	chr5:115898800-115901000	Weak transcription	Pancreas	Pancrea
49	chr5:115898800-115902200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:115898800-115902200	Enhancers	Fetal Brain Female	brain

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