Variant report

Variant	rs7730674
Chromosome Location	chr5:115896768-115896769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115895001..115897524-chr5:115899186..115901085,2	K562	blood:
2	chr5:115892597..115894869-chr5:115895299..115897417,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10055012	0.97[ASN][1000 genomes]
rs1027742	0.88[AFR][1000 genomes]
rs17140139	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2840113	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5016403	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724329	0.94[ASN][1000 genomes]
rs9327006	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327007	1.00[ASN][1000 genomes]
rs9327008	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115880800-115900600	Weak transcription	Fetal Kidney	kidney
2	chr5:115886600-115901000	Weak transcription	Placenta	Placenta
3	chr5:115887400-115897000	Weak transcription	Small Intestine	intestine
4	chr5:115889400-115899400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:115889600-115898400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:115890000-115900800	Enhancers	Brain Hippocampus Middle	brain
7	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
8	chr5:115890800-115898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
10	chr5:115891000-115898200	Weak transcription	Right Atrium	heart
11	chr5:115891000-115900600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:115891000-115907600	Weak transcription	Ovary	ovary
13	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
14	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:115893800-115902400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:115894400-115897000	Enhancers	Primary hematopoietic stem cells	blood
17	chr5:115894400-115900800	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:115894400-115902600	Enhancers	Brain Substantia Nigra	brain
19	chr5:115894600-115897200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr5:115894600-115897400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:115894600-115897600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:115894800-115896800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:115894800-115897000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:115894800-115897400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:115895200-115898400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:115895400-115897000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:115895400-115897000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr5:115895400-115897400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr5:115895600-115897000	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr5:115895600-115897000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:115895600-115901400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:115895800-115898800	Weak transcription	Fetal Brain Female	brain
33	chr5:115895800-115902400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr5:115896000-115897200	Weak transcription	Brain Anterior Caudate	brain
35	chr5:115896000-115898200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:115896000-115898200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:115896000-115898200	Weak transcription	Right Ventricle	heart
38	chr5:115896000-115898400	Weak transcription	Left Ventricle	heart
39	chr5:115896000-115898400	Weak transcription	Pancreas	Pancrea
40	chr5:115896000-115899000	Weak transcription	Fetal Brain Male	brain
41	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
43	chr5:115896000-115905200	Weak transcription	Lung	lung
44	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:115896200-115897600	Enhancers	H9 Cell Line	embryonic stem cell
46	chr5:115896200-115897600	Enhancers	Fetal Intestine Small	intestine
47	chr5:115896200-115898200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:115896200-115899000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr5:115896200-115899400	Weak transcription	Colon Smooth Muscle	Colon
50	chr5:115896200-115899600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links