Variant report

Variant	rs17140139
Chromosome Location	chr5:115901872-115901873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115901171..115903788-chr5:115907458..115909680,2	K562	blood:
2	chr5:115901171..115904653-chr5:115905070..115909680,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10055012	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1862372	0.81[GIH][hapmap]
rs2840113	0.82[CEU][hapmap];0.87[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5016403	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724329	0.90[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs7730674	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327006	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327007	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9327008	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
2	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
3	chr5:115891000-115907600	Weak transcription	Ovary	ovary
4	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
5	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:115893800-115902400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:115894400-115902600	Enhancers	Brain Substantia Nigra	brain
8	chr5:115895800-115902400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
11	chr5:115896000-115905200	Weak transcription	Lung	lung
12	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr5:115896400-115904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
16	chr5:115898000-115903600	Enhancers	Brain Angular Gyrus	brain
17	chr5:115898400-115902600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:115898800-115902200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:115898800-115902200	Enhancers	Fetal Brain Female	brain
22	chr5:115898800-115902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:115898800-115902400	Weak transcription	Left Ventricle	heart
24	chr5:115898800-115904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:115898800-115904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:115899000-115902600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr5:115899400-115902000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:115899400-115903200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:115899600-115902000	Enhancers	Fetal Muscle Leg	muscle
30	chr5:115899600-115902800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
31	chr5:115899800-115902600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr5:115899800-115903600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:115900000-115904000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:115900600-115903000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:115900600-115907000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr5:115900800-115902600	Enhancers	H9 Cell Line	embryonic stem cell
38	chr5:115900800-115902600	Enhancers	Fetal Brain Male	brain
39	chr5:115901000-115902600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:115901000-115908000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
41	chr5:115901200-115902200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr5:115901200-115902200	Weak transcription	Fetal Lung	lung
43	chr5:115901200-115902400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
44	chr5:115901200-115902600	Enhancers	Brain Anterior Caudate	brain
45	chr5:115901200-115902800	Enhancers	Fetal Kidney	kidney
46	chr5:115901200-115907600	Weak transcription	Pancreas	Pancrea
47	chr5:115901400-115902200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:115901400-115902200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:115901400-115902600	Enhancers	Brain Hippocampus Middle	brain
50	chr5:115901400-115902800	Enhancers	Brain Inferior Temporal Lobe	brain

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