Variant report

Variant	rs10061737
Chromosome Location	chr5:94065205-94065206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10035632	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10037228	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10041262	0.87[ASN][1000 genomes]
rs10041551	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041843	0.87[ASN][1000 genomes]
rs10044797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051931	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053484	0.87[ASN][1000 genomes]
rs10058130	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10058618	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062248	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076188	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076461	0.87[ASN][1000 genomes]
rs10078049	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078304	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476612	0.87[ASN][1000 genomes]
rs10476613	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476615	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949227	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11955373	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960129	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517866	0.87[ASN][1000 genomes]
rs12518034	0.87[ASN][1000 genomes]
rs12522312	0.87[ASN][1000 genomes]
rs13169956	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353994	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354061	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13358642	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13361811	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13362556	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28645132	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28787271	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs306573	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs306575	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869218	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55974730	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6862592	0.87[ASN][1000 genomes]
rs6873364	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755898	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7725095	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725698	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731360	0.88[EUR][1000 genomes]
rs7737779	0.87[ASN][1000 genomes]
rs9314118	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10061737	ANKRD32	cis	multi-tissue	Pritchard
rs10061737	MCTP1	Cis_1M	lymphoblastoid	RTeQTL
rs10061737	ANKRD32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94071600	Weak transcription	Lung	lung
2	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
4	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94050600-94065400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94050600-94069000	Weak transcription	Hela-S3	cervix
7	chr5:94051000-94067800	Weak transcription	Fetal Thymus	thymus
8	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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