Variant report

Variant	rs6873364
Chromosome Location	chr5:94081455-94081456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10035632	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10035650	1.00[CHB][hapmap]
rs10037228	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10039801	1.00[CHB][hapmap]
rs10041262	0.81[ASN][1000 genomes]
rs10041551	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10041843	0.81[ASN][1000 genomes]
rs10043779	1.00[CHB][hapmap]
rs10044797	0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10051931	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10053484	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10056685	0.86[CEU][hapmap]
rs10058130	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10058618	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10059194	1.00[CHB][hapmap]
rs10061737	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10062248	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070258	0.86[CEU][hapmap]
rs10076188	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076461	0.81[ASN][1000 genomes]
rs10078049	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10078304	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476612	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10476613	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476615	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949227	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11955373	0.86[CEU][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11960129	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12516225	0.86[CEU][hapmap]
rs12517866	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12518034	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12522312	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13169956	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13353994	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13354061	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13358642	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13361811	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13362556	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17083818	1.00[CHB][hapmap]
rs28645132	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28787271	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs306573	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs306575	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869218	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55974730	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6862592	0.81[ASN][1000 genomes]
rs755898	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7705424	0.91[CEU][hapmap]
rs7725095	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7725698	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7731360	0.89[EUR][1000 genomes]
rs7737779	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9314118	0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6873364	ANKRD32	cis	multi-tissue	Pritchard
rs6873364	MCTP1	Cis_1M	lymphoblastoid	RTeQTL
rs6873364	ANKRD32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
2	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94079200-94081800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94079200-94082000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:94079800-94081800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94079800-94081800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:94080000-94081600	Enhancers	GM12878-XiMat	blood
8	chr5:94080000-94081800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:94080200-94083600	Weak transcription	Thymus	Thymus
10	chr5:94080800-94082200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:94080800-94083000	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:94080800-94085000	Enhancers	Hela-S3	cervix
13	chr5:94081200-94082400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94081400-94082400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:94081400-94082800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:94081400-94083000	Enhancers	HUVEC	blood vessel
17	chr5:94081400-94083400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links