Variant report

Variant	rs13169956
Chromosome Location	chr5:94078296-94078297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10035632	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10037228	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10041262	0.87[ASN][1000 genomes]
rs10041551	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041843	0.87[ASN][1000 genomes]
rs10044797	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051931	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053484	0.87[ASN][1000 genomes]
rs10058130	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10058618	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061737	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076188	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076461	0.87[ASN][1000 genomes]
rs10078049	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078304	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476612	0.87[ASN][1000 genomes]
rs10476613	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476615	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949227	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11955373	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517866	0.87[ASN][1000 genomes]
rs12518034	0.87[ASN][1000 genomes]
rs12522312	0.87[ASN][1000 genomes]
rs13353994	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354061	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13358642	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13361811	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13362556	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28645132	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28787271	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs306573	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs306575	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869218	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55974730	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6862592	0.87[ASN][1000 genomes]
rs6873364	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755898	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7725095	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725698	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731360	0.89[EUR][1000 genomes]
rs7737779	0.87[ASN][1000 genomes]
rs9314118	0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13169956	ANKRD32	cis	multi-tissue	Pritchard
rs13169956	MCTP1	Cis_1M	lymphoblastoid	RTeQTL
rs13169956	ANKRD32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
3	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:94067000-94080600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:94071000-94080000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
7	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:94077200-94079800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:94077200-94080000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94077600-94078600	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:94077800-94079400	Enhancers	Hela-S3	cervix
12	chr5:94078000-94079400	Enhancers	Fetal Thymus	thymus

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