Variant report

Variant	rs10062248
Chromosome Location	chr5:94086368-94086369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035632	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10037228	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10041262	0.87[ASN][1000 genomes]
rs10041551	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041843	0.87[ASN][1000 genomes]
rs10044797	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051931	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053484	0.87[ASN][1000 genomes]
rs10058130	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10058618	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061737	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076188	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076461	0.87[ASN][1000 genomes]
rs10078049	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078304	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476612	0.87[ASN][1000 genomes]
rs10476613	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476615	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949227	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11955373	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517866	0.87[ASN][1000 genomes]
rs12518034	0.87[ASN][1000 genomes]
rs12522312	0.87[ASN][1000 genomes]
rs13169956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353994	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354061	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13358642	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13361811	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13362556	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28645132	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28787271	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs306573	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs306575	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869218	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55974730	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6862592	0.87[ASN][1000 genomes]
rs6873364	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755898	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7725095	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725698	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731360	0.84[EUR][1000 genomes]
rs7737779	0.87[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10062248	ANKRD32	Cis_1M	lymphoblastoid	RTeQTL
rs10062248	ANKRD32	cis	multi-tissue	Pritchard
rs10062248	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94082800-94086400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:94083000-94088000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
6	chr5:94084800-94088600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94085000-94090400	Weak transcription	Hela-S3	cervix
8	chr5:94085200-94105800	Weak transcription	Fetal Thymus	thymus
9	chr5:94085400-94087600	Enhancers	Fetal Heart	heart
10	chr5:94086200-94086400	Enhancers	Spleen	Spleen
11	chr5:94086200-94087600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:94086200-94101800	Weak transcription	Primary hematopoietic stem cells	blood

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