Variant report

Variant	rs10062290
Chromosome Location	chr5:52479904-52479905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10035806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10036771	1.00[ASN][1000 genomes]
rs10037897	0.94[AFR][1000 genomes]
rs10038626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10041228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055517	0.88[AFR][1000 genomes]
rs10056186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10062115	0.88[AFR][1000 genomes]
rs10062285	0.83[AFR][1000 genomes]
rs10063035	0.88[AFR][1000 genomes]
rs10067291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070665	0.88[AFR][1000 genomes]
rs10072441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10076569	0.88[AFR][1000 genomes]
rs10076915	0.88[AFR][1000 genomes]
rs10078306	0.83[AFR][1000 genomes]
rs10078555	0.88[AFR][1000 genomes]
rs10079017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471375	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471376	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471846	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10471847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10471848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471861	0.88[AFR][1000 genomes]
rs16881076	0.94[AFR][1000 genomes]
rs16881107	0.83[AFR][1000 genomes]
rs2161557	0.83[AFR][1000 genomes]
rs28710068	0.94[AFR][1000 genomes]
rs28750444	0.90[ASN][1000 genomes]
rs28832964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3212642	1.00[AMR][1000 genomes]
rs56722411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56879404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57126477	1.00[AMR][1000 genomes]
rs57640910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57886899	1.00[AMR][1000 genomes]
rs59717628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60579843	1.00[AMR][1000 genomes]
rs73756639	1.00[AMR][1000 genomes]
rs9885531	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52479800-52480600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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