Variant report

Variant	rs60579843
Chromosome Location	chr5:52456900-52456901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035806	1.00[AMR][1000 genomes]
rs10035881	1.00[AMR][1000 genomes]
rs10038626	1.00[AMR][1000 genomes]
rs10041228	1.00[AMR][1000 genomes]
rs10050450	1.00[AMR][1000 genomes]
rs10056186	1.00[AMR][1000 genomes]
rs10062093	1.00[AMR][1000 genomes]
rs10062290	1.00[AMR][1000 genomes]
rs10067291	1.00[AMR][1000 genomes]
rs10072441	1.00[AMR][1000 genomes]
rs10073579	1.00[AMR][1000 genomes]
rs10079017	1.00[AMR][1000 genomes]
rs10079884	1.00[AMR][1000 genomes]
rs10080198	1.00[AMR][1000 genomes]
rs10471374	1.00[AMR][1000 genomes]
rs10471375	1.00[AMR][1000 genomes]
rs10471376	1.00[AMR][1000 genomes]
rs10471841	1.00[AMR][1000 genomes]
rs10471846	1.00[AMR][1000 genomes]
rs10471847	1.00[AMR][1000 genomes]
rs10471848	1.00[AMR][1000 genomes]
rs28832964	1.00[AMR][1000 genomes]
rs3212642	1.00[AMR][1000 genomes]
rs56722411	1.00[AMR][1000 genomes]
rs56879404	1.00[AMR][1000 genomes]
rs57126477	1.00[AMR][1000 genomes]
rs57640910	1.00[AMR][1000 genomes]
rs57886899	1.00[AMR][1000 genomes]
rs59717628	1.00[AMR][1000 genomes]
rs73756639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52456800-52457600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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