Variant report

Variant	rs10471374
Chromosome Location	chr5:52500351-52500352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037897	1.00[AFR][1000 genomes]
rs10038626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10041228	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055517	0.83[AFR][1000 genomes]
rs10056186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062115	0.88[AFR][1000 genomes]
rs10062290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063035	0.88[AFR][1000 genomes]
rs10067291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070665	0.88[AFR][1000 genomes]
rs10072441	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076569	0.88[AFR][1000 genomes]
rs10076915	0.88[AFR][1000 genomes]
rs10078555	0.88[AFR][1000 genomes]
rs10079017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471861	0.88[AFR][1000 genomes]
rs16881076	1.00[AFR][1000 genomes]
rs16881107	0.83[AFR][1000 genomes]
rs28710068	1.00[AFR][1000 genomes]
rs28832964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3212642	1.00[AMR][1000 genomes]
rs56722411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56879404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57126477	1.00[AMR][1000 genomes]
rs57640910	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57886899	1.00[AMR][1000 genomes]
rs59717628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60579843	1.00[AMR][1000 genomes]
rs73756639	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9885531	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830297	chr5:52492494-52707758	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv515913	chr5:52492677-52545841	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv522454	chr5:52492677-52571758	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv968913	chr5:52495296-52509384	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52489000-52507000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:52489600-52507800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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