Variant report

Variant	rs57126477
Chromosome Location	chr5:52429910-52429911
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035806	1.00[AMR][1000 genomes]
rs10035881	1.00[AMR][1000 genomes]
rs10038626	1.00[AMR][1000 genomes]
rs10041228	1.00[AMR][1000 genomes]
rs10050450	1.00[AMR][1000 genomes]
rs10056186	1.00[AMR][1000 genomes]
rs10062093	1.00[AMR][1000 genomes]
rs10062290	1.00[AMR][1000 genomes]
rs10067291	1.00[AMR][1000 genomes]
rs10072441	1.00[AMR][1000 genomes]
rs10073579	1.00[AMR][1000 genomes]
rs10079017	1.00[AMR][1000 genomes]
rs10079884	1.00[AMR][1000 genomes]
rs10080198	1.00[AMR][1000 genomes]
rs10471374	1.00[AMR][1000 genomes]
rs10471375	1.00[AMR][1000 genomes]
rs10471376	1.00[AMR][1000 genomes]
rs10471841	1.00[AMR][1000 genomes]
rs10471846	1.00[AMR][1000 genomes]
rs10471847	1.00[AMR][1000 genomes]
rs10471848	1.00[AMR][1000 genomes]
rs28832964	1.00[AMR][1000 genomes]
rs3212642	1.00[AMR][1000 genomes]
rs56722411	1.00[AMR][1000 genomes]
rs56879404	1.00[AMR][1000 genomes]
rs57640910	1.00[AMR][1000 genomes]
rs57886899	1.00[AMR][1000 genomes]
rs59717628	1.00[AMR][1000 genomes]
rs60579843	1.00[AMR][1000 genomes]
rs73756639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv880957	chr5:52418582-52443231	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52426800-52430800	Weak transcription	Osteobl	bone
2	chr5:52428200-52430400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:52429200-52430200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:52429800-52432200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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