Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10058828	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10515608	1.00[CHB][hapmap]
rs10515611	1.00[CHB][hapmap]
rs11953091	1.00[CHB][hapmap]
rs11957083	1.00[CHB][hapmap]
rs11959374	1.00[CHB][hapmap]
rs1345740	1.00[CHB][hapmap]
rs17108205	1.00[CHB][hapmap]
rs17719614	1.00[CHB][hapmap]
rs17719733	1.00[CHB][hapmap]
rs17719769	1.00[CHB][hapmap]
rs17719787	1.00[CHB][hapmap]
rs17720060	1.00[CHB][hapmap]
rs17720226	1.00[CHB][hapmap]
rs17720357	0.95[ASN][1000 genomes]
rs17720407	0.96[ASN][1000 genomes]
rs17776324	1.00[CHB][hapmap]
rs17776792	1.00[CHB][hapmap]
rs17776900	1.00[CHB][hapmap]
rs17776978	1.00[CHB][hapmap]
rs2303057	1.00[CHB][hapmap]
rs41531052	0.85[ASN][1000 genomes]
rs6890544	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147849200-147854400	Enhancers	HUVEC	blood vessel
2	chr5:147849400-147855600	Weak transcription	Fetal Brain Male	brain
3	chr5:147849600-147856000	Weak transcription	Brain Anterior Caudate	brain
4	chr5:147853400-147854200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:147853600-147854200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:147853600-147854200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr5:147853600-147854400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:147853800-147854200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:147853800-147854200	Active TSS	Right Atrium	heart
10	chr5:147853800-147854200	Flanking Active TSS	K562	blood
11	chr5:147854000-147854200	Active TSS	HSMM	muscle
12	chr5:147854000-147861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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