Variant report

Variant	rs17720060
Chromosome Location	chr5:147756462-147756463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:147754412..147757315-chr5:147760463..147763292,2	MCF-7	breast:
2	chr5:147752174..147758747-chr5:147760816..147763342,8	K562	blood:
3	chr5:147754004..147757324-chr5:147763355..147766181,3	K562	blood:
4	chr5:147745321..147747162-chr5:147755896..147758835,2	K562	blood:
5	chr5:147756205..147758091-chr5:147758100..147760768,2	K562	blood:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10515608	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10515611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957083	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11959374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1345740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363706	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1422971	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108199	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17719614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719932	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17720226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17720357	1.00[EUR][1000 genomes]
rs17720407	1.00[EUR][1000 genomes]
rs17776270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17776324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776590	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17776978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2303057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41531052	1.00[EUR][1000 genomes]
rs58943147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60540892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61508663	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61555444	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61601119	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6863921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873482	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873778	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6888281	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147729200-147762200	Weak transcription	Aorta	Aorta
2	chr5:147747800-147762400	Weak transcription	Ovary	ovary
3	chr5:147748200-147756800	Weak transcription	Fetal Brain Female	brain
4	chr5:147749600-147757400	Weak transcription	Psoas Muscle	Psoas
5	chr5:147749800-147757400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:147749800-147762200	Weak transcription	Adipose Nuclei	Adipose
7	chr5:147750000-147756600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:147750000-147762400	Weak transcription	Brain Substantia Nigra	brain
9	chr5:147750400-147756600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:147751200-147761800	Weak transcription	Fetal Brain Male	brain
11	chr5:147751400-147756800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:147751400-147763000	Weak transcription	Esophagus	oesophagus
13	chr5:147751800-147762400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:147752200-147756600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:147752200-147756800	Weak transcription	Gastric	stomach
16	chr5:147752200-147760800	Weak transcription	Fetal Lung	lung
17	chr5:147752600-147761000	Weak transcription	Brain Germinal Matrix	brain
18	chr5:147752600-147762200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:147752600-147762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:147752800-147762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:147752800-147762800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:147753200-147756600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:147753200-147757000	Weak transcription	Primary B cells from cord blood	blood
24	chr5:147753200-147762200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:147753600-147756600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:147753600-147756600	Weak transcription	Liver	Liver
27	chr5:147754400-147762200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:147754400-147762200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:147754400-147762400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:147754600-147757400	Weak transcription	Left Ventricle	heart
31	chr5:147754600-147762400	Weak transcription	Stomach Mucosa	stomach
32	chr5:147754800-147756600	Weak transcription	Brain Anterior Caudate	brain
33	chr5:147754800-147758200	Weak transcription	Fetal Intestine Small	intestine
34	chr5:147754800-147762400	Weak transcription	Fetal Intestine Large	intestine
35	chr5:147755000-147756600	Weak transcription	Brain Hippocampus Middle	brain
36	chr5:147755000-147758000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:147755000-147762000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:147755000-147762200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:147755200-147758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr5:147755200-147758600	Weak transcription	Primary T cells from cord blood	blood
41	chr5:147755400-147762000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:147755400-147762400	Weak transcription	Fetal Stomach	stomach
43	chr5:147755400-147762400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:147755400-147762600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:147755600-147761600	Weak transcription	Right Atrium	heart
46	chr5:147755600-147762400	Weak transcription	Pancreas	Pancrea
47	chr5:147755600-147763000	Weak transcription	Lung	lung
48	chr5:147755800-147757800	Enhancers	Fetal Heart	heart
49	chr5:147755800-147758000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr5:147755800-147762400	Weak transcription	Fetal Muscle Leg	muscle

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