Variant report

Variant	rs11948260
Chromosome Location	chr5:147751689-147751690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10515608	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10515611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11959374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1345740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363706	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1422971	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422972	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422975	0.95[YRI][hapmap];0.99[AFR][1000 genomes]
rs17108199	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108209	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719549	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17719614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719822	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719932	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17720060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17720226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17720357	1.00[EUR][1000 genomes]
rs17720407	1.00[EUR][1000 genomes]
rs17776270	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17776324	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776590	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17776978	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2303057	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41531052	1.00[EUR][1000 genomes]
rs58943147	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60540892	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61508663	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61555444	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61601119	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6863921	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873482	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873778	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6884299	0.81[AFR][1000 genomes]
rs6888281	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897195	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264524	0.98[AFR][1000 genomes]
rs73264531	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719881	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725787	0.86[AFR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147729200-147762200	Weak transcription	Aorta	Aorta
2	chr5:147730200-147754200	Weak transcription	Left Ventricle	heart
3	chr5:147747800-147762400	Weak transcription	Ovary	ovary
4	chr5:147748200-147756800	Weak transcription	Fetal Brain Female	brain
5	chr5:147749600-147757400	Weak transcription	Psoas Muscle	Psoas
6	chr5:147749800-147757400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:147749800-147762200	Weak transcription	Adipose Nuclei	Adipose
8	chr5:147750000-147756600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:147750000-147762400	Weak transcription	Brain Substantia Nigra	brain
10	chr5:147750400-147756600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:147750600-147752600	Strong transcription	Brain Germinal Matrix	brain
12	chr5:147750800-147752800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:147751200-147761800	Weak transcription	Fetal Brain Male	brain
14	chr5:147751400-147756800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:147751400-147763000	Weak transcription	Esophagus	oesophagus
16	chr5:147751600-147753600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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