Variant report

Variant	rs17720407
Chromosome Location	chr5:147855957-147855958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10058828	1.00[ASN][1000 genomes]
rs10062444	0.96[ASN][1000 genomes]
rs10515608	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs10515611	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs11948260	1.00[EUR][1000 genomes]
rs11953091	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs11957083	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs11959374	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs1345740	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs1363706	1.00[EUR][1000 genomes]
rs1422971	1.00[EUR][1000 genomes]
rs1422972	1.00[EUR][1000 genomes]
rs17108199	1.00[EUR][1000 genomes]
rs17108205	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs17108209	1.00[EUR][1000 genomes]
rs17719549	1.00[EUR][1000 genomes]
rs17719614	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs17719733	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs17719769	0.91[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17719787	0.91[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17719822	1.00[EUR][1000 genomes]
rs17719932	1.00[EUR][1000 genomes]
rs17720060	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs17720226	0.91[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17720357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17776270	1.00[EUR][1000 genomes]
rs17776324	0.91[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17776590	1.00[EUR][1000 genomes]
rs17776792	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs17776900	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs17776978	0.91[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2303057	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs41531052	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58943147	1.00[EUR][1000 genomes]
rs60540892	1.00[EUR][1000 genomes]
rs61508663	1.00[EUR][1000 genomes]
rs61555444	1.00[EUR][1000 genomes]
rs61601119	1.00[EUR][1000 genomes]
rs6863921	1.00[EUR][1000 genomes]
rs6873482	1.00[EUR][1000 genomes]
rs6873778	1.00[EUR][1000 genomes]
rs6888281	1.00[EUR][1000 genomes]
rs6890544	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs6897195	1.00[EUR][1000 genomes]
rs73264531	1.00[EUR][1000 genomes]
rs7719881	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147849600-147856000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:147854000-147861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:147855600-147856000	Enhancers	Fetal Brain Male	brain

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