Variant report

Variant	rs6873778
Chromosome Location	chr5:147748427-147748428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147741494..147743937-chr5:147745806..147748571,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10515608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11948260	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11953091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1422971	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1422972	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1422975	0.98[AFR][1000 genomes]
rs17108199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108205	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108209	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17719549	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17719614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17720060	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17720226	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17720357	1.00[EUR][1000 genomes]
rs17720407	1.00[EUR][1000 genomes]
rs17776270	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17776324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776792	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776900	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17776978	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2303057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41531052	1.00[EUR][1000 genomes]
rs58943147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60540892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61555444	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61601119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888281	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890544	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6897195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73264524	0.97[AFR][1000 genomes]
rs73264531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7719881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725787	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3470753	chr5:147742345-147750111	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3470754	chr5:147742345-147750111	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv16005	chr5:147742531-147749953	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147709400-147749200	Weak transcription	Psoas Muscle	Psoas
2	chr5:147723600-147751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:147729200-147762200	Weak transcription	Aorta	Aorta
4	chr5:147730200-147754200	Weak transcription	Left Ventricle	heart
5	chr5:147747800-147762400	Weak transcription	Ovary	ovary
6	chr5:147748200-147750600	Weak transcription	Brain Germinal Matrix	brain
7	chr5:147748200-147756800	Weak transcription	Fetal Brain Female	brain

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