Variant report

Variant	rs17776900
Chromosome Location	chr5:147785038-147785039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147784800..147787075-chr5:147804739..147807528,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10515608	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10515611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11948260	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11953091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11957083	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11959374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1345740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1363706	1.00[EUR][1000 genomes]
rs1422971	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1422972	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17108199	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17108209	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17719549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17719614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17719733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17719769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17719787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17719822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17719932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17720060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17720226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17720357	1.00[EUR][1000 genomes]
rs17720407	1.00[EUR][1000 genomes]
rs17776270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17776324	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17776590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17776792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17776978	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303057	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41531052	1.00[EUR][1000 genomes]
rs58943147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60540892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61508663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61555444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61601119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6863921	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6873482	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6873778	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6888281	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6890544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6897195	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73264531	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7719881	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
6	chr5:147765800-147789600	Weak transcription	Lung	lung
7	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
8	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
10	chr5:147772600-147789600	Weak transcription	Gastric	stomach
11	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:147772600-147808800	Strong transcription	Dnd41	blood
13	chr5:147772800-147788400	Weak transcription	Psoas Muscle	Psoas
14	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:147773600-147786000	Strong transcription	Primary T cells from cord blood	blood
17	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
18	chr5:147773800-147796200	Strong transcription	HSMM	muscle
19	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:147776400-147789800	Weak transcription	Pancreas	Pancrea
25	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
26	chr5:147777400-147785800	Strong transcription	HMEC	breast
27	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:147778400-147792800	Strong transcription	K562	blood
32	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
35	chr5:147778600-147785200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr5:147778600-147785400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:147778600-147791200	Strong transcription	HepG2	liver
38	chr5:147778600-147798600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:147778600-147809400	Strong transcription	Liver	Liver
40	chr5:147778800-147798400	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr5:147778800-147800400	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr5:147778800-147803200	Weak transcription	Small Intestine	intestine
43	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:147779000-147786000	Strong transcription	Fetal Intestine Large	intestine
47	chr5:147779000-147789000	Weak transcription	Right Ventricle	heart
48	chr5:147779000-147795400	Weak transcription	Fetal Intestine Small	intestine
49	chr5:147779000-147796200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr5:147779000-147796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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