Variant report

Variant	rs10063929
Chromosome Location	chr5:15524843-15524844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053439	0.83[AMR][1000 genomes]
rs10064400	1.00[AMR][1000 genomes]
rs10067454	1.00[AMR][1000 genomes]
rs10073853	0.83[AMR][1000 genomes]
rs10079843	1.00[AMR][1000 genomes]
rs10475065	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958980	0.83[AMR][1000 genomes]
rs11960780	0.83[AMR][1000 genomes]
rs13354129	1.00[AMR][1000 genomes]
rs13362417	1.00[AMR][1000 genomes]
rs34723945	0.83[AMR][1000 genomes]
rs58390853	0.83[AMR][1000 genomes]
rs7729228	0.83[AMR][1000 genomes]
rs9312895	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:15511200-15527400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
4	chr5:15515200-15526600	Weak transcription	Ovary	ovary
5	chr5:15515200-15532800	Weak transcription	Aorta	Aorta
6	chr5:15515600-15525000	Weak transcription	Psoas Muscle	Psoas
7	chr5:15517600-15526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:15518800-15547400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:15519000-15532800	Weak transcription	Esophagus	oesophagus
10	chr5:15520000-15526800	Weak transcription	Dnd41	blood
11	chr5:15521800-15525000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:15522000-15528200	Weak transcription	Fetal Kidney	kidney
13	chr5:15522000-15538600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:15522200-15525000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:15522400-15525600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:15522400-15525600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:15522400-15525600	Weak transcription	Right Ventricle	heart
18	chr5:15522400-15526200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:15522600-15525000	Weak transcription	Right Atrium	heart
20	chr5:15522600-15525600	Weak transcription	Osteobl	bone
21	chr5:15522600-15525800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:15522600-15526400	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:15522600-15532800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:15522800-15525600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:15522800-15525600	Weak transcription	Brain Anterior Caudate	brain
26	chr5:15522800-15525600	Weak transcription	NHDF-Ad	bronchial
27	chr5:15522800-15525800	Weak transcription	NHLF	lung
28	chr5:15522800-15526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:15522800-15526000	Weak transcription	Brain Substantia Nigra	brain
30	chr5:15522800-15532800	Weak transcription	HSMMtube	muscle
31	chr5:15522800-15535200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:15522800-15535400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:15522800-15538000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr5:15523000-15525600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:15523000-15526000	Weak transcription	Brain Angular Gyrus	brain
36	chr5:15523000-15526400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:15523000-15532800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:15523000-15533800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:15523000-15537800	Weak transcription	Fetal Stomach	stomach
40	chr5:15523200-15531000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:15523200-15535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:15524000-15526000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr5:15524000-15532600	Weak transcription	Lung	lung
44	chr5:15524000-15532800	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:15524000-15533200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:15524000-15558600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:15524400-15525800	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:15524600-15525400	Enhancers	HSMM	muscle
49	chr5:15524600-15527000	Genic enhancers	Fetal Heart	heart
50	chr5:15524800-15525200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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