Variant report

Variant	rs13362417
Chromosome Location	chr5:15573142-15573143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053439	0.83[AMR][1000 genomes]
rs10063929	1.00[AMR][1000 genomes]
rs10064400	1.00[AMR][1000 genomes]
rs10067454	1.00[AMR][1000 genomes]
rs10073853	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs10079843	1.00[AMR][1000 genomes]
rs10475065	1.00[AMR][1000 genomes]
rs11958980	0.83[AMR][1000 genomes]
rs11960780	0.83[AMR][1000 genomes]
rs13354129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34723945	0.83[AMR][1000 genomes]
rs58390853	0.83[AMR][1000 genomes]
rs7729228	0.83[AMR][1000 genomes]
rs9312895	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15555800-15584200	Weak transcription	HSMM	muscle
2	chr5:15558800-15574800	Weak transcription	Fetal Stomach	stomach
3	chr5:15559200-15574800	Weak transcription	Aorta	Aorta
4	chr5:15560800-15573600	Weak transcription	Fetal Kidney	kidney
5	chr5:15562400-15573600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:15564000-15574800	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:15567200-15580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:15567400-15573200	Weak transcription	Brain Anterior Caudate	brain
9	chr5:15567400-15573200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:15567400-15573400	Weak transcription	Brain Substantia Nigra	brain
11	chr5:15570600-15575800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:15570600-15576200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:15570800-15573600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:15571000-15577200	Weak transcription	Right Ventricle	heart
15	chr5:15571400-15581000	Enhancers	Fetal Heart	heart
16	chr5:15571600-15573400	Weak transcription	Brain Angular Gyrus	brain
17	chr5:15571800-15573200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:15571800-15578200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:15572000-15574800	Weak transcription	Ovary	ovary
20	chr5:15572000-15578000	Weak transcription	Psoas Muscle	Psoas
21	chr5:15572000-15583600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:15572000-15583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:15572400-15573400	Enhancers	Left Ventricle	heart
24	chr5:15572800-15574000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:15572800-15575400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:15572800-15583200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:15573000-15573200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:15573000-15573400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:15573000-15573600	Enhancers	HUVEC	blood vessel
30	chr5:15573000-15574200	Enhancers	Brain Cingulate Gyrus	brain
31	chr5:15573000-15574800	Enhancers	Brain Hippocampus Middle	brain
32	chr5:15573000-15576600	Enhancers	Colon Smooth Muscle	Colon
33	chr5:15573000-15583800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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