Variant report

Variant	rs10475065
Chromosome Location	chr5:15517641-15517642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10053439	0.83[AMR][1000 genomes]
rs10063929	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064400	1.00[AMR][1000 genomes]
rs10067454	1.00[AMR][1000 genomes]
rs10073853	0.83[AMR][1000 genomes]
rs10079843	1.00[AMR][1000 genomes]
rs11958980	0.83[AMR][1000 genomes]
rs11960780	0.83[AMR][1000 genomes]
rs13354129	1.00[AMR][1000 genomes]
rs13362417	1.00[AMR][1000 genomes]
rs34723945	0.83[AMR][1000 genomes]
rs58390853	0.83[AMR][1000 genomes]
rs7729228	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:15502600-15522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:15502800-15521400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:15503400-15521000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:15503800-15521000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:15504600-15521200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:15511200-15522000	Weak transcription	Fetal Brain Male	brain
10	chr5:15511200-15527400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:15511400-15521000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:15511600-15521200	Weak transcription	Fetal Lung	lung
13	chr5:15511600-15522400	Weak transcription	HSMMtube	muscle
14	chr5:15511800-15521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:15511800-15521400	Weak transcription	Osteobl	bone
16	chr5:15512000-15518800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:15512000-15522000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:15512200-15521600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:15512200-15524600	Weak transcription	HSMM	muscle
20	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
21	chr5:15512400-15521200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:15512400-15521600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:15512600-15521000	Weak transcription	Colon Smooth Muscle	Colon
24	chr5:15514600-15519000	Weak transcription	Dnd41	blood
25	chr5:15515200-15521600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:15515200-15526600	Weak transcription	Ovary	ovary
27	chr5:15515200-15532800	Weak transcription	Aorta	Aorta
28	chr5:15515400-15521000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:15515400-15521000	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:15515600-15518800	Weak transcription	Left Ventricle	heart
31	chr5:15515600-15521000	Weak transcription	Adipose Nuclei	Adipose
32	chr5:15515600-15521000	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:15515600-15521200	Weak transcription	Brain Anterior Caudate	brain
34	chr5:15515600-15525000	Weak transcription	Psoas Muscle	Psoas
35	chr5:15515800-15517800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:15515800-15518000	Weak transcription	Right Atrium	heart
37	chr5:15515800-15518800	Weak transcription	Fetal Heart	heart
38	chr5:15515800-15521000	Weak transcription	Brain Substantia Nigra	brain
39	chr5:15515800-15521200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr5:15516000-15521000	Weak transcription	NHDF-Ad	bronchial
41	chr5:15516200-15518200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:15516800-15519000	Strong transcription	Fetal Stomach	stomach
43	chr5:15517400-15517800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:15517400-15518200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr5:15517400-15518800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr5:15517600-15517800	Enhancers	Lung	lung
47	chr5:15517600-15518200	Enhancers	Right Ventricle	heart
48	chr5:15517600-15519000	Enhancers	Esophagus	oesophagus
49	chr5:15517600-15526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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