Variant report

Variant	rs58390853
Chromosome Location	chr5:15585500-15585501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10053439	1.00[AMR][1000 genomes]
rs10063929	0.83[AMR][1000 genomes]
rs10064400	0.83[AMR][1000 genomes]
rs10067454	0.83[AMR][1000 genomes]
rs10079843	0.83[AMR][1000 genomes]
rs10475065	0.83[AMR][1000 genomes]
rs11960780	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13354129	0.83[AMR][1000 genomes]
rs13362417	0.83[AMR][1000 genomes]
rs28624806	0.82[AFR][1000 genomes]
rs34723945	1.00[AMR][1000 genomes]
rs7729228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15574000-15594200	Weak transcription	Fetal Kidney	kidney
2	chr5:15576200-15588000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:15578200-15590200	Weak transcription	Right Ventricle	heart
4	chr5:15578200-15596200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:15578200-15600200	Weak transcription	Left Ventricle	heart
6	chr5:15580000-15586000	Weak transcription	Brain Substantia Nigra	brain
7	chr5:15580200-15586000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:15581000-15604400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:15581600-15603400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:15582000-15587200	Weak transcription	Ovary	ovary
11	chr5:15584000-15599200	Weak transcription	HSMMtube	muscle
12	chr5:15584400-15585600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:15584400-15587200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:15584400-15587200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:15584600-15586600	Weak transcription	Fetal Stomach	stomach
16	chr5:15584800-15586600	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:15585000-15585800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:15585000-15586000	Weak transcription	Fetal Lung	lung
19	chr5:15585000-15586600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:15585000-15594600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:15585000-15604000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:15585000-15606400	Weak transcription	Adipose Nuclei	Adipose
23	chr5:15585000-15630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:15585200-15585600	Weak transcription	NHLF	lung
25	chr5:15585200-15586200	Enhancers	Osteobl	bone
26	chr5:15585200-15587600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:15585200-15588400	Enhancers	NHDF-Ad	bronchial
28	chr5:15585200-15594200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:15585200-15594400	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:15585200-15600000	Weak transcription	HSMM	muscle
31	chr5:15585200-15601000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:15585200-15602000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:15585200-15605200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr5:15585400-15586200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:15585400-15587000	Enhancers	Fetal Heart	heart
36	chr5:15585400-15588200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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