Variant report

Variant	rs10066070
Chromosome Location	chr5:94093011-94093012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10056977	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059194	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11740749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953346	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17084024	1.00[CHB][hapmap]
rs293032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs293061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs72775332	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10066070	ANKRD32	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
4	chr5:94085200-94105800	Weak transcription	Fetal Thymus	thymus
5	chr5:94086200-94101800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94087400-94100400	Weak transcription	Spleen	Spleen
7	chr5:94089600-94107800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94091400-94094600	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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