Variant report

Variant	rs11740749
Chromosome Location	chr5:94125912-94125913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10056977	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10059194	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10066070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953346	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs153851	0.82[JPT][hapmap]
rs153852	0.82[JPT][hapmap]
rs17084024	1.00[CHB][hapmap]
rs293032	1.00[CHB][hapmap]
rs293061	1.00[CHB][hapmap]
rs36727	0.82[JPT][hapmap]
rs72775332	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
3	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:94106000-94126000	Weak transcription	Lung	lung
8	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94114400-94128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:94120800-94127800	Weak transcription	GM12878-XiMat	blood
12	chr5:94122600-94129600	Weak transcription	Adipose Nuclei	Adipose
13	chr5:94122800-94128800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr5:94123400-94126000	Strong transcription	Fetal Thymus	thymus
15	chr5:94124200-94127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:94124600-94131000	Weak transcription	Small Intestine	intestine
17	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:94124800-94128200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:94124800-94128400	Weak transcription	Primary B cells from cord blood	blood
20	chr5:94124800-94129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:94125000-94127600	Weak transcription	Dnd41	blood
22	chr5:94125600-94128800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr5:94125800-94126200	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links