Variant report

Variant	rs293032
Chromosome Location	chr5:94188734-94188735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10041551	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap]
rs10059194	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10066070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11740749	1.00[CHB][hapmap]
rs11953346	0.82[ASW][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17084024	1.00[CHB][hapmap]
rs293061	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72775332	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs293032	ANKRD32	Cis_1M	lymphoblastoid	RTeQTL
rs293032	ANKRD32	cis	multi-tissue	Pritchard

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
9	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94183600-94188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:94183800-94189000	Weak transcription	HUVEC	blood vessel
12	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94185400-94189000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:94186000-94189000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:94186000-94189000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
17	chr5:94186200-94189400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:94186200-94194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:94186400-94188800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:94186400-94189200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
22	chr5:94186600-94191000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:94187400-94188800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr5:94188200-94189000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:94188400-94188800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:94188400-94189000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:94188400-94189000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr5:94188600-94188800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:94188600-94189600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr5:94188600-94189800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:94188600-94190600	Enhancers	HUES64 Cell Line	embryonic stem cell

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