Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10038836	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10058168	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10070606	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10079823	1.00[AFR][1000 genomes]
rs10471459	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10472068	1.00[AFR][1000 genomes]
rs10472069	0.87[AFR][1000 genomes]
rs10472070	0.87[AFR][1000 genomes]
rs10514876	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10514877	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11750820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11750857	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13354829	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13358097	1.00[AFR][1000 genomes]
rs17280636	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17282012	1.00[AFR][1000 genomes]
rs1876690	1.00[AFR][1000 genomes]
rs35694320	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs5011219	1.00[AFR][1000 genomes]
rs72760270	1.00[AFR][1000 genomes]
rs72760285	1.00[AFR][1000 genomes]
rs72760294	1.00[AFR][1000 genomes]
rs72760302	0.82[EUR][1000 genomes]
rs9292173	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58027800-58049400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:58028600-58034200	Weak transcription	Aorta	Aorta
3	chr5:58029000-58031600	Weak transcription	Fetal Intestine Large	intestine
4	chr5:58029000-58031600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:58030000-58031200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:58030000-58032000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:58030200-58031200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:58030800-58031200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:58031000-58031600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:58031000-58031600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:58031000-58031800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:58031000-58032000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:58031000-58032200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:58031000-58036000	Enhancers	Fetal Intestine Small	intestine

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