Variant report

Variant	rs13354829
Chromosome Location	chr5:58031697-58031698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10038836	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055378	0.82[EUR][1000 genomes]
rs10055388	0.82[EUR][1000 genomes]
rs10058168	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10060872	0.82[EUR][1000 genomes]
rs10066482	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10070606	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078211	0.82[EUR][1000 genomes]
rs10079823	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10471459	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10472068	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10472069	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10472070	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10514876	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10514877	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11750820	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11750857	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12152774	0.82[EUR][1000 genomes]
rs12153291	0.81[EUR][1000 genomes]
rs13358097	1.00[AFR][1000 genomes]
rs13436622	0.82[EUR][1000 genomes]
rs17280636	1.00[AFR][1000 genomes]
rs17282012	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17348080	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1876690	1.00[AFR][1000 genomes]
rs2194037	0.82[EUR][1000 genomes]
rs35694320	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5011219	1.00[AFR][1000 genomes]
rs6877247	0.82[EUR][1000 genomes]
rs72760270	1.00[AFR][1000 genomes]
rs72760285	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72760294	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72760302	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs753219	0.82[EUR][1000 genomes]
rs753220	0.82[EUR][1000 genomes]
rs9283719	0.81[EUR][1000 genomes]
rs9292171	0.82[EUR][1000 genomes]
rs9292173	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58027800-58049400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:58028600-58034200	Weak transcription	Aorta	Aorta
3	chr5:58030000-58032000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:58031000-58031800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:58031000-58032000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:58031000-58032200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:58031000-58036000	Enhancers	Fetal Intestine Small	intestine
8	chr5:58031200-58033000	Enhancers	HepG2	liver
9	chr5:58031400-58032000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:58031600-58031800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:58031600-58033800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:58031600-58034200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:58031600-58036000	Enhancers	Fetal Intestine Large	intestine

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