Variant report

Variant	rs17280636
Chromosome Location	chr5:57957687-57957688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10038836	1.00[AFR][1000 genomes]
rs10055378	0.84[EUR][1000 genomes]
rs10055388	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10055649	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs10058168	0.87[AFR][1000 genomes]
rs10060872	0.84[EUR][1000 genomes]
rs10066482	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10070606	0.87[AFR][1000 genomes]
rs10077599	1.00[CEU][hapmap]
rs10078211	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10079823	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10471459	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs10472068	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10472069	0.94[CEU][hapmap];0.87[AFR][1000 genomes]
rs10472070	1.00[CEU][hapmap];0.87[AFR][1000 genomes]
rs10514876	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs10514877	0.84[CEU][hapmap];0.87[AFR][1000 genomes]
rs11750820	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11750857	0.87[AFR][1000 genomes]
rs12152774	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12153291	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13354829	1.00[AFR][1000 genomes]
rs13358097	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13436622	0.84[EUR][1000 genomes]
rs159746	1.00[CHD][hapmap]
rs17280328	1.00[CEU][hapmap]
rs17282012	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17348080	0.84[CEU][hapmap]
rs1876690	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2194037	0.84[EUR][1000 genomes]
rs35694320	1.00[AFR][1000 genomes]
rs5011219	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6877247	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs72760270	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72760285	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72760294	1.00[AFR][1000 genomes]
rs753219	0.84[EUR][1000 genomes]
rs753220	0.84[EUR][1000 genomes]
rs9283719	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9292171	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9292173	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020937	chr5:57938969-57959918	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv4845	chr5:57949493-57994156	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2760929	chr5:57952586-57959954	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1806916	chr5:57954311-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1807554	chr5:57954311-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv437464	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv437465	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv965588	chr5:57954339-57961148	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3469257	chr5:57954495-57960793	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3515411	chr5:57954645-57960643	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3515410	chr5:57955107-57960290	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1811798	chr5:57955139-57959120	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1812026	chr5:57955139-57959120	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3515407	chr5:57955145-57960543	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1813208	chr5:57955151-57959132	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1809866	chr5:57955303-57959412	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1804170	chr5:57955360-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1805481	chr5:57955360-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1806418	chr5:57955360-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1806826	chr5:57955360-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1810732	chr5:57955360-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv14646	chr5:57955598-57959465	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3469258	chr5:57955721-57959625	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3515405	chr5:57955751-57959615	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3515406	chr5:57955762-57959611	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3515409	chr5:57955765-57959582	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3469259	chr5:57955775-57959593	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3469260	chr5:57955796-57959598	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3515414	chr5:57955799-57959558	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3515412	chr5:57955801-57959554	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1814469	chr5:57955832-57959159	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1808176	chr5:57955832-57959431	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3469261	chr5:57955844-57959513	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3515413	chr5:57955854-57959512	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv328987	chr5:57955858-57959508	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3469262	chr5:57955858-57959510	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv3515415	chr5:57955858-57959510	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv514306	chr5:57956031-57959003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1806185	chr5:57956032-57959231	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1810352	chr5:57956032-57959231	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv2422174	chr5:57956072-57959132	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv1808705	chr5:57956072-57959141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv1804254	chr5:57956072-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv1804609	chr5:57956072-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv1806742	chr5:57956072-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv1806745	chr5:57956072-57959223	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv1807107	chr5:57956072-57959223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57957200-57957800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:57957200-57957800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:57957400-57957800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:57957400-57958200	Enhancers	Fetal Stomach	stomach

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