Variant report

Variant	rs11750820
Chromosome Location	chr5:58024615-58024616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10038836	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10055388	0.84[CEU][hapmap]
rs10055649	0.80[CEU][hapmap]
rs10058168	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10066482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10070606	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10077599	0.84[CEU][hapmap]
rs10078211	0.84[CEU][hapmap]
rs10079823	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs10471459	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10472068	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs10472069	0.87[AFR][1000 genomes]
rs10472070	0.84[CEU][hapmap];0.87[AFR][1000 genomes]
rs10514876	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10514877	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11750857	0.87[AFR][1000 genomes]
rs12152774	0.80[CEU][hapmap]
rs12153291	0.85[CEU][hapmap]
rs13354829	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13358097	1.00[AFR][1000 genomes]
rs17280328	0.84[CEU][hapmap]
rs17280636	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17282012	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs17348080	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1876690	1.00[AFR][1000 genomes]
rs35694320	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5011219	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs6877247	0.84[CEU][hapmap]
rs72760270	1.00[AFR][1000 genomes]
rs72760285	1.00[AFR][1000 genomes]
rs72760294	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72760302	0.83[EUR][1000 genomes]
rs9283719	0.84[CEU][hapmap]
rs9292171	0.85[CEU][hapmap]
rs9292173	0.84[CEU][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58022800-58029000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:58024600-58025000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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