Variant report

Variant	rs10068653
Chromosome Location	chr5:94199333-94199334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17084199	0.89[ASN][1000 genomes]
rs17084201	0.85[ASN][1000 genomes]
rs17084215	0.85[ASN][1000 genomes]
rs2277012	0.93[ASN][1000 genomes]
rs987550	1.00[ASN][1000 genomes]
rs987551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94163800-94209800	Weak transcription	Dnd41	blood
2	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
5	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
8	chr5:94189800-94199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:94193000-94201600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:94193200-94202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:94193400-94200200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:94194000-94209200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94194200-94204200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94197600-94201800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:94197800-94206200	Weak transcription	HUVEC	blood vessel
17	chr5:94199000-94200400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:94199200-94200200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:94199200-94200400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:94199200-94200400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:94199200-94200400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:94199200-94200400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:94199200-94200600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:94199200-94200800	Enhancers	HUES48 Cell Line	embryonic stem cell

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