Variant report

Variant	rs17084199
Chromosome Location	chr5:94219954-94219955
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10068653	0.89[ASN][1000 genomes]
rs153071	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs17084201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17084215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277012	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs26996	1.00[AMR][1000 genomes]
rs27918	1.00[AMR][1000 genomes]
rs987550	0.89[ASN][1000 genomes]
rs987551	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94204400-94240600	Weak transcription	Lung	lung
5	chr5:94206800-94230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94207000-94227000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94207200-94223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94207200-94230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94208800-94220000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:94209400-94223000	Weak transcription	HUVEC	blood vessel
12	chr5:94211400-94224200	Weak transcription	Primary T cells from cord blood	blood
13	chr5:94217800-94220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr5:94217800-94223800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:94218000-94231000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr5:94219200-94220000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:94219400-94221200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:94219400-94223000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:94219800-94220200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:94219800-94220200	Enhancers	Brain Substantia Nigra	brain
21	chr5:94219800-94220200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr5:94219800-94220400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:94219800-94221600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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