Variant report

Variant	rs17084215
Chromosome Location	chr5:94228304-94228305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10068653	0.85[ASN][1000 genomes]
rs153071	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs17084199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17084201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2277012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs26996	1.00[AMR][1000 genomes]
rs27918	1.00[AMR][1000 genomes]
rs987550	0.85[ASN][1000 genomes]
rs987551	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94204400-94240600	Weak transcription	Lung	lung
5	chr5:94206800-94230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94207200-94230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94218000-94231000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94220200-94238200	Weak transcription	Psoas Muscle	Psoas
10	chr5:94220800-94229200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:94220800-94230000	Weak transcription	Fetal Brain Female	brain
12	chr5:94221000-94229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:94224800-94229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:94224800-94229200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94224800-94230200	Weak transcription	HUVEC	blood vessel
16	chr5:94225000-94234800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:94225200-94236200	Weak transcription	GM12878-XiMat	blood
18	chr5:94225800-94241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:94226200-94249000	Weak transcription	Left Ventricle	heart
20	chr5:94227000-94230800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:94227000-94231800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr5:94227200-94230400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:94227600-94229400	Weak transcription	Adipose Nuclei	Adipose
24	chr5:94227800-94228600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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