Variant report

Variant	rs10072930
Chromosome Location	chr5:124391521-124391522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036117	1.00[TSI][hapmap]
rs10051837	1.00[ASN][1000 genomes]
rs10061112	1.00[AFR][1000 genomes]
rs10067540	1.00[ASN][1000 genomes]
rs10069295	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069495	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070651	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070961	1.00[ASN][1000 genomes]
rs10071979	1.00[ASN][1000 genomes]
rs13169162	1.00[ASN][1000 genomes]
rs13359584	1.00[ASN][1000 genomes]
rs28484892	1.00[ASN][1000 genomes]
rs28887500	1.00[ASN][1000 genomes]
rs56111606	1.00[ASN][1000 genomes]
rs57050857	1.00[ASN][1000 genomes]
rs60700802	1.00[ASN][1000 genomes]
rs6860106	1.00[ASN][1000 genomes]
rs6867459	1.00[ASN][1000 genomes]
rs6881063	1.00[AFR][1000 genomes]
rs6883243	1.00[ASN][1000 genomes]
rs6887240	1.00[ASN][1000 genomes]
rs72785245	1.00[ASN][1000 genomes]
rs72785247	1.00[ASN][1000 genomes]
rs72785252	1.00[ASN][1000 genomes]
rs73782570	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:124382800-124394200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:124387200-124392200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:124387200-124392400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:124387200-124392400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:124387200-124392400	Weak transcription	Brain Substantia Nigra	brain
7	chr5:124387400-124392400	Weak transcription	Aorta	Aorta
8	chr5:124388400-124396400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:124388400-124396400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:124388600-124392400	Weak transcription	Left Ventricle	heart
11	chr5:124388600-124395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:124389600-124396200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:124390000-124392200	Weak transcription	HMEC	breast
14	chr5:124390200-124392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:124390200-124392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:124390200-124392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:124390400-124392200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:124390400-124392200	Weak transcription	NHEK	skin
19	chr5:124390400-124392600	Weak transcription	Right Atrium	heart
20	chr5:124390600-124392200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:124390600-124396400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:124390800-124395400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:124391000-124393200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr5:124391200-124392200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr5:124391200-124396000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:124391400-124391600	Enhancers	H1 Cell Line	embryonic stem cell

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