Variant report

Variant	rs73782570
Chromosome Location	chr5:124342912-124342913
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10051837	1.00[ASN][1000 genomes]
rs10067540	1.00[ASN][1000 genomes]
rs10069295	1.00[ASN][1000 genomes]
rs10069495	1.00[ASN][1000 genomes]
rs10070651	1.00[ASN][1000 genomes]
rs10070961	1.00[ASN][1000 genomes]
rs10071979	1.00[ASN][1000 genomes]
rs10072930	1.00[ASN][1000 genomes]
rs13169162	1.00[ASN][1000 genomes]
rs13359584	1.00[ASN][1000 genomes]
rs28484892	1.00[ASN][1000 genomes]
rs28887500	1.00[ASN][1000 genomes]
rs56111606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57050857	1.00[ASN][1000 genomes]
rs60700802	1.00[ASN][1000 genomes]
rs6860106	1.00[ASN][1000 genomes]
rs6867459	1.00[ASN][1000 genomes]
rs6883243	1.00[ASN][1000 genomes]
rs6887240	1.00[ASN][1000 genomes]
rs72785245	1.00[ASN][1000 genomes]
rs72785247	1.00[ASN][1000 genomes]
rs72785252	1.00[ASN][1000 genomes]
rs7736256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124323400-124348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124336800-124343000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:124337000-124343000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:124337000-124343000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:124338000-124343000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:124338400-124343000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124338400-124343000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:124340200-124343000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:124340400-124343000	Enhancers	Fetal Brain Male	brain
10	chr5:124340400-124343600	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:124340600-124343000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:124341400-124343000	Enhancers	Primary hematopoietic stem cells	blood
13	chr5:124341600-124343000	Enhancers	Fetal Thymus	thymus
14	chr5:124342000-124347000	Weak transcription	Fetal Kidney	kidney
15	chr5:124342200-124346000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:124342200-124346000	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:124342200-124346600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:124342200-124347000	Weak transcription	Fetal Intestine Large	intestine
19	chr5:124342400-124348600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:124342600-124343000	Flanking Active TSS	Dnd41	blood
21	chr5:124342600-124343200	Enhancers	GM12878-XiMat	blood
22	chr5:124342600-124344600	Enhancers	Primary B cells from cord blood	blood
23	chr5:124342600-124346000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:124342600-124346200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:124342800-124346200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:124342800-124347800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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