Variant report

Variant	rs10074536
Chromosome Location	chr5:37681355-37681356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10038414	1.00[EUR][1000 genomes]
rs10039768	1.00[EUR][1000 genomes]
rs10042970	1.00[EUR][1000 genomes]
rs10043213	1.00[EUR][1000 genomes]
rs10050392	1.00[EUR][1000 genomes]
rs10050932	1.00[EUR][1000 genomes]
rs10051811	1.00[EUR][1000 genomes]
rs10053094	1.00[EUR][1000 genomes]
rs10055123	1.00[EUR][1000 genomes]
rs10055301	1.00[EUR][1000 genomes]
rs10055334	1.00[EUR][1000 genomes]
rs10055747	1.00[EUR][1000 genomes]
rs10058062	1.00[EUR][1000 genomes]
rs10059214	1.00[EUR][1000 genomes]
rs10060693	1.00[EUR][1000 genomes]
rs10063001	1.00[EUR][1000 genomes]
rs10067239	1.00[EUR][1000 genomes]
rs10067869	1.00[EUR][1000 genomes]
rs10071967	1.00[EUR][1000 genomes]
rs10075851	1.00[EUR][1000 genomes]
rs10076872	1.00[EUR][1000 genomes]
rs10078503	1.00[EUR][1000 genomes]
rs1104717	1.00[EUR][1000 genomes]
rs1104718	1.00[EUR][1000 genomes]
rs11742290	1.00[EUR][1000 genomes]
rs12186464	1.00[EUR][1000 genomes]
rs12332422	1.00[EUR][1000 genomes]
rs12332493	1.00[EUR][1000 genomes]
rs12656455	1.00[EUR][1000 genomes]
rs13166616	1.00[EUR][1000 genomes]
rs13175777	1.00[EUR][1000 genomes]
rs1400855	1.00[EUR][1000 genomes]
rs16903667	1.00[EUR][1000 genomes]
rs16903675	1.00[EUR][1000 genomes]
rs16903689	1.00[EUR][1000 genomes]
rs16903703	1.00[EUR][1000 genomes]
rs16903704	1.00[EUR][1000 genomes]
rs16903706	1.00[EUR][1000 genomes]
rs16903711	1.00[AMR][1000 genomes]
rs1829294	1.00[EUR][1000 genomes]
rs1973713	1.00[EUR][1000 genomes]
rs28876205	1.00[EUR][1000 genomes]
rs34871356	1.00[EUR][1000 genomes]
rs4074950	1.00[EUR][1000 genomes]
rs4334908	1.00[EUR][1000 genomes]
rs4370304	1.00[EUR][1000 genomes]
rs4395662	1.00[EUR][1000 genomes]
rs4407651	1.00[EUR][1000 genomes]
rs4407652	1.00[EUR][1000 genomes]
rs4418127	1.00[EUR][1000 genomes]
rs4449561	1.00[EUR][1000 genomes]
rs475517	1.00[EUR][1000 genomes]
rs481834	1.00[EUR][1000 genomes]
rs488315	1.00[EUR][1000 genomes]
rs489123	1.00[EUR][1000 genomes]
rs563999	1.00[EUR][1000 genomes]
rs587641	1.00[EUR][1000 genomes]
rs59176360	1.00[EUR][1000 genomes]
rs596461	1.00[EUR][1000 genomes]
rs61748201	1.00[EUR][1000 genomes]
rs626649	1.00[EUR][1000 genomes]
rs6451332	1.00[EUR][1000 genomes]
rs671077	1.00[EUR][1000 genomes]
rs6859972	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6863124	1.00[EUR][1000 genomes]
rs6863547	1.00[EUR][1000 genomes]
rs6868163	1.00[EUR][1000 genomes]
rs6868843	1.00[EUR][1000 genomes]
rs6869205	1.00[EUR][1000 genomes]
rs6888597	1.00[EUR][1000 genomes]
rs6898225	1.00[EUR][1000 genomes]
rs6898271	1.00[EUR][1000 genomes]
rs7702750	1.00[EUR][1000 genomes]
rs7703638	1.00[EUR][1000 genomes]
rs7703670	1.00[EUR][1000 genomes]
rs7704548	1.00[EUR][1000 genomes]
rs7708301	1.00[EUR][1000 genomes]
rs7708708	1.00[EUR][1000 genomes]
rs7710547	1.00[EUR][1000 genomes]
rs7714066	1.00[EUR][1000 genomes]
rs7719190	1.00[EUR][1000 genomes]
rs7723389	1.00[EUR][1000 genomes]
rs7724308	1.00[EUR][1000 genomes]
rs7725018	1.00[EUR][1000 genomes]
rs7725049	1.00[EUR][1000 genomes]
rs7725297	1.00[EUR][1000 genomes]
rs7727291	1.00[EUR][1000 genomes]
rs7727603	1.00[EUR][1000 genomes]
rs7729195	1.00[EUR][1000 genomes]
rs7732315	1.00[EUR][1000 genomes]
rs7734593	1.00[EUR][1000 genomes]
rs7736605	1.00[EUR][1000 genomes]
rs7736862	1.00[EUR][1000 genomes]
rs7737210	1.00[EUR][1000 genomes]
rs7737986	1.00[EUR][1000 genomes]
rs8180378	1.00[EUR][1000 genomes]
rs9292658	1.00[EUR][1000 genomes]
rs9292659	1.00[EUR][1000 genomes]
rs9292660	1.00[EUR][1000 genomes]
rs9292661	1.00[EUR][1000 genomes]
rs9292663	1.00[EUR][1000 genomes]
rs951579	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37673000-37684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:37680200-37690400	Weak transcription	Aorta	Aorta
3	chr5:37681000-37681800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:37681000-37689000	Weak transcription	Right Ventricle	heart

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