Variant report

Variant	rs10080722
Chromosome Location	chr6:142699900-142699901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142697707..142700330-chr6:142702224..142704168,2	MCF-7	breast:
2	chr6:142696462..142698436-chr6:142698561..142701397,2	MCF-7	breast:
3	chr6:142617568..142620556-chr6:142699575..142701431,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10080956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484631	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496360	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496367	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496368	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496372	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142693200-142700000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142693200-142700200	Enhancers	HMEC	breast
3	chr6:142693200-142700600	Enhancers	Hela-S3	cervix
4	chr6:142695600-142700400	Enhancers	Fetal Lung	lung
5	chr6:142696000-142700200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:142696000-142700200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:142696600-142700000	Enhancers	Osteobl	bone
8	chr6:142697000-142703200	Weak transcription	NHDF-Ad	bronchial
9	chr6:142698000-142700000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:142698000-142700000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:142698000-142700000	Flanking Active TSS	A549	lung
12	chr6:142698000-142700000	Enhancers	HSMMtube	muscle
13	chr6:142698000-142700200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:142698000-142700200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:142698000-142700200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:142698000-142700200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:142698000-142702000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:142698200-142700000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:142698200-142700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:142698200-142700400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:142698200-142700400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:142698200-142700400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:142698200-142700400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:142698200-142700400	Enhancers	Small Intestine	intestine
25	chr6:142698200-142702800	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:142698400-142700200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:142698600-142700000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:142698600-142700400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:142698600-142706200	Weak transcription	NHLF	lung
30	chr6:142698600-142733200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:142698800-142700000	Enhancers	NH-A	brain
32	chr6:142698800-142700200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:142698800-142707600	Weak transcription	Placenta	Placenta
34	chr6:142698800-142707800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:142699200-142700000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:142699200-142700000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:142699200-142700000	Flanking Active TSS	HUVEC	blood vessel
38	chr6:142699200-142700200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:142699200-142700200	Enhancers	Fetal Heart	heart
40	chr6:142699200-142700200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr6:142699400-142700200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:142699600-142700000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:142699600-142700000	Enhancers	NHEK	skin
44	chr6:142699600-142700400	Enhancers	Fetal Kidney	kidney
45	chr6:142699600-142700400	Enhancers	Fetal Stomach	stomach
46	chr6:142699600-142700400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr6:142699600-142700600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:142699600-142702200	Genic enhancers	HepG2	liver
49	chr6:142699600-142708000	Weak transcription	Pancreas	Pancrea
50	chr6:142699600-142709200	Weak transcription	Fetal Intestine Large	intestine

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