Variant report

Variant	rs9496365
Chromosome Location	chr6:142715759-142715760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10080722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321867	1.00[AMR][1000 genomes]
rs9484631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496357	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496371	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142698600-142733200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:142699800-142718600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142699800-142719200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:142706200-142719600	Weak transcription	NHEK	skin
5	chr6:142706400-142717200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:142708000-142734800	Weak transcription	Esophagus	oesophagus
7	chr6:142708200-142718600	Weak transcription	Placenta	Placenta
8	chr6:142708200-142719400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:142709200-142721000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:142709400-142718800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:142710000-142721600	Weak transcription	NHLF	lung
12	chr6:142710200-142733400	Weak transcription	HSMM	muscle
13	chr6:142710600-142719600	Weak transcription	Small Intestine	intestine
14	chr6:142711400-142725000	Strong transcription	HepG2	liver
15	chr6:142711800-142716600	Enhancers	Primary T cells from cord blood	blood
16	chr6:142711800-142725200	Strong transcription	Liver	Liver
17	chr6:142712200-142735000	Weak transcription	Fetal Brain Male	brain
18	chr6:142712800-142715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:142713200-142715800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:142713600-142716200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:142713600-142717600	Strong transcription	Fetal Lung	lung
22	chr6:142713800-142716000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:142713800-142717400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:142713800-142718000	Strong transcription	A549	lung
25	chr6:142714200-142733200	Weak transcription	HMEC	breast
26	chr6:142714600-142716400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:142714600-142716600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:142714600-142718000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr6:142714600-142718200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:142715000-142716400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:142715000-142717200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:142715200-142718400	Enhancers	HUVEC	blood vessel
33	chr6:142715600-142716400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:142715600-142716800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr6:142715600-142718200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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