Variant report

Variant	rs9321867
Chromosome Location	chr6:142687635-142687636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142687131..142689757-chr6:142689967..142691514,2	MCF-7	breast:
2	chr6:142686552..142689660-chr6:142691331..142695100,3	MCF-7	breast:
3	chr6:142666001..142668001-chr6:142687415..142689537,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10080722	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484631	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484632	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484633	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496356	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496357	0.84[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496358	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496360	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496361	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496365	1.00[AMR][1000 genomes]
rs9496367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496368	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9496371	1.00[AMR][1000 genomes]
rs9496372	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142676800-142688600	Weak transcription	Fetal Heart	heart
2	chr6:142679400-142688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:142679400-142693200	Weak transcription	Hela-S3	cervix
4	chr6:142681000-142695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:142682600-142694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:142682800-142693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:142682800-142694600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:142683200-142693400	Weak transcription	HSMM	muscle
9	chr6:142683400-142693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:142683600-142693200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:142683800-142688200	Enhancers	A549	lung
12	chr6:142683800-142688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:142683800-142688600	Weak transcription	NHLF	lung
14	chr6:142683800-142691400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:142683800-142693200	Weak transcription	HMEC	breast
16	chr6:142683800-142693400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:142683800-142693400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:142683800-142693400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:142683800-142693600	Weak transcription	Placenta	Placenta
20	chr6:142684000-142688800	Weak transcription	HUVEC	blood vessel
21	chr6:142684000-142689400	Weak transcription	Liver	Liver
22	chr6:142684000-142691400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:142685200-142688600	Weak transcription	Fetal Brain Male	brain
24	chr6:142685200-142688800	Weak transcription	Fetal Brain Female	brain
25	chr6:142687600-142688000	Weak transcription	Fetal Lung	lung
26	chr6:142687600-142688600	Weak transcription	HepG2	liver

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