Variant report
| Variant | rs10080846 |
|---|---|
| Chromosome Location | chr6:92157293-92157294 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:92124229..92126485-chr6:92156044..92159485,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10080273 | 1.00[EUR][1000 genomes] |
| rs28416486 | 1.00[EUR][1000 genomes] |
| rs58764630 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6917407 | 1.00[EUR][1000 genomes] |
| rs6917891 | 1.00[EUR][1000 genomes] |
| rs6937868 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73753712 | 1.00[EUR][1000 genomes] |
| rs73753713 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73753718 | 1.00[EUR][1000 genomes] |
| rs73753762 | 1.00[EUR][1000 genomes] |
| rs73753798 | 1.00[EUR][1000 genomes] |
| rs73755934 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7746254 | 1.00[EUR][1000 genomes] |
| rs9294498 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9444877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9444878 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9444879 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9444880 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451697 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451699 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451702 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9451703 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451704 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451711 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451712 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752130 | chr6:91740447-92196479 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017467 | chr6:91802015-92417554 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv538360 | chr6:91802015-92417554 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025913 | chr6:92103872-92258396 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv538361 | chr6:92103872-92258396 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:92152200-92159000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 2 | chr6:92157200-92157600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
