Variant report

Variant	rs9444880
Chromosome Location	chr6:92175571-92175572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080846	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28416486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58764630	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6917407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937868	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73753712	1.00[EUR][1000 genomes]
rs73753713	1.00[EUR][1000 genomes]
rs73753718	1.00[EUR][1000 genomes]
rs73753762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753798	1.00[EUR][1000 genomes]
rs73755934	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7746254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294498	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9444877	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9444878	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9444879	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451697	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451699	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451702	0.89[AFR][1000 genomes]
rs9451703	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451704	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451711	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9451712	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92171800-92176600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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