Variant report

Variant	rs7746254
Chromosome Location	chr6:92186239-92186240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10080273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080846	1.00[EUR][1000 genomes]
rs28416486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58764630	1.00[EUR][1000 genomes]
rs6917407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937868	1.00[EUR][1000 genomes]
rs73753712	1.00[EUR][1000 genomes]
rs73753713	1.00[EUR][1000 genomes]
rs73753718	1.00[EUR][1000 genomes]
rs73753762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753798	1.00[EUR][1000 genomes]
rs73755934	1.00[EUR][1000 genomes]
rs9294498	1.00[EUR][1000 genomes]
rs9444877	1.00[EUR][1000 genomes]
rs9444878	1.00[EUR][1000 genomes]
rs9444879	1.00[EUR][1000 genomes]
rs9444880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9451697	1.00[EUR][1000 genomes]
rs9451699	1.00[EUR][1000 genomes]
rs9451703	1.00[EUR][1000 genomes]
rs9451704	1.00[EUR][1000 genomes]
rs9451711	1.00[EUR][1000 genomes]
rs9451712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92185400-92186400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:92185400-92186400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:92185400-92186800	Enhancers	HUVEC	blood vessel
4	chr6:92185600-92186400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:92185600-92186400	Enhancers	Hela-S3	cervix
6	chr6:92186000-92186400	Enhancers	GM12878-XiMat	blood
7	chr6:92186000-92189000	Weak transcription	Aorta	Aorta
8	chr6:92186000-92189200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:92186200-92188800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:92186200-92189000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:92186200-92189400	Weak transcription	Small Intestine	intestine
12	chr6:92186200-92190400	Weak transcription	Stomach Mucosa	stomach

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